SEMINAR
seminar는 매주 월요일 9시30분에 있습니다. (장소: 의대 본관 3층 308호 대학원 세미나실 )
  2006 2005 2004 2003 2002

 

2006. May(05)      
8 우정훈 graPT  
8 정용 서버 및 백업 상황  
15 조성범 SNP Chip analysis  
15 한미령 Research plan  
15 신현정 Critical review on SPM for biological modules  
22 이혜원 Bombarding MGED with Xperanto-TMA  
22 박찬희 The whole new GRIP  
22 김민구 Research plan  
29 정태수 바이오캔디 점검 (김민구 분산 상황)  
29 나영지 Lung Fibroblast Radiation data analysis  
         
2006. April(04)      
3 전체 Brain Storming  
3 박유랑 유방센터 데이터 요약  
10 김지훈 Similarity measures for lattices  
10 정희준 Cell graph for pathways & (패스웨이 입력현황)  
17 김도균 Drug Information Service  
17 박찬희 new Grip  
24 조성범 SNP Chip Analysis  
24 나영지 Strategy for Microarray Meta-analysis  
         
2006. March(03)      
6 전체 마이크로어레이 분석 총정리  
13 김민구, 전체 바이오캔디 모듈 테스트  
20 이혜원 Xperanto-TMA  
27 정용 GEO 총정리, GEO를 이용한 메타분석 계획  
         
2006. February(02)      
6 박찬희 newGRIP 현황 요약  
6 정태수 Prediction of mycoplasma subtypes  
6 김민구 Pararllelizing BioCANDi  
13 나영지 Lung Fibroblast Radiation data analysis  
13 한미령 Protein Lattice 진행상황  
13 우정훈 Conferences 2006 - 2007  
20 심재현 Drug Database  
27 정용 GEO, for being the best exploiter  
27 김지훈 BioLattice Application - relational pattern -  
27 이혜원 Xperanto-TMA release and Application Notes  
27 조성범 Research Plan  
         
2006. January(01)      
2 전원 Summary of BIOCANDI modules  
9 나영지 BMT data analysis  
9 이혜원 간암 데이터 분석  
9 우정훈 OA/RA data analysis  
16 정 용 약물유전체 자료입력현황  
16 정태수 Run BioCANDi from multiple calculation slaves  
16 심재현 강남센터 / Drug database  
23 김도균 ChromoViz implementation for BioCANDi  
23 박유랑 GOChase 2: a framework for correcting semantic inconsistent annotation and improving accuracy of the functional analysis based on Gene Ontology  
23 김민구 Sequential pattern mining 정리  
         
2005. January(1)      
08 [AppGen]
박유랑		 GO Annotator: Web based utility for gene annotation with cross reference relationship in biological databases.  
15 [SysBiol]
박찬희		 Gene Ontology Multidimensional Scaling Mapping  
22 [ClinInfo]
김옥구		 PhactaManager(임상시험자료관리시스템) 개발 현황  
29 [MAInfo]
이수연		 AB microarray 분석  
2005. February(2)      
12 [AppGen]
정태수		 Workflow of array CGH data analysis  
19 [SysBiol]
한미령 		Gene Ontology related Tools  
26 [ClinInfo]
박유랑 		Implementation of Cancer Genomics Object Model  
         
2005. March(3)      
5 [MAInfo]
정태수		 Pipeline of microarray data anlysis  
12 [AppGen]
정희준		 Review ArrayXPath  
19 [SysBiol]
김옥구		 Integration of Biological Data and Clinical Trial Data  
21 [ClinInfo]
이혜원		 Progress in developing TMA-OM and Xperanto-TMA  
28 [MAInfo]
조성범		 Analysis of squamous cell carcinoma microarray data  
         
2005. April(4)      
4 [AppGen]
김민구		 Inferring gene-module relations by biclustering on large-scale expression data using sequential pattern mining  
11 [SysBiol]
김미현 		Web-DEDS  
18 [ClinInfo]
김옥구 		NRL PhactaX 개발현황 및 종료계획  
25 [MAInfo]
나영지 		Related Study to Low Dose Ionizing Radiation Data  
         
2005. May(5)      
2 [AppGen]
이혜원		 Integration of Xperanto-TMA and Xperanto  
9 [SysBiol]
정태수		 PathPlus - not a single pathway but also topology of pathways  
16 [ClinInfo]
박유랑		 BioEMR 프로젝트 진행계획  
23 [MAInfo]
정태수		 BioCANDI2 in Xperanto  
30 [AppGen]
박찬희 		New GRIP Progress( from sequence to protein family )  
         
2005. June(6)      
13 [SysBio]
김지훈		 Biological interpretation of BioLattice results  
27 [ClinInfo]
박유랑		 BioEMR 프로젝트 진행사항 – Clinical data storage  
         
2005. July(7)      
04 [AppGen]
조성범		 Identification of Pathways related to the Clinical Outcome of the Microarray data using Global Test  
11 [MAInfo]
한미령 		aCGH analysis of ER-positive breast cancer  
18 정태수 BioCANDI in Xperanto  
18
 정희준 MapGO  
18 김민구 Results on SPM  
25
 김지훈 Manuscript of BioLattice  
25 정 용 Review of the GRIP  
25
 조성범 Knowledge based Microarray Classification  
         
2005. August(8)      
01
 정 용 GEO localization  
01 우정훈 Review of toxicogenomics  
08
 김윤희 GO annotation tool들의 리뷰 (scoring 및 통계분석 관점)  
08 한미령 aCGH 분석 도구들의 정리 및 BioCANDi 통합  
08
 나영지 Radiation Data Analysis  
08 김민구 CEBS review  
13 김미현 Review of Matrix factorization  
22
 이혜원 BioChip Analysis routines  
22 김도균 ChromoViz Implementation as a web-based software  
22
 박찬희 newGRIP 진행 보고  
29 전원 << BioCANDi 최종 정리 >>  
         
         
2005. September(9)      
05 정 용 GEO Localization  
05 한미령 protein lattice 정리 및 투고 진행상황  
05 조성범 gsea, global test and classification for microarray data  
12 박유랑 GOChase II - final  
12 박찬희 newGRIP - final  
12 김미현 학위논문 연구계획서  
26 김윤희 PathTalk  
26 김민구 Cluster viewer demonstration  
26 나영지 Radiation data analysis  
         
         
2005. October(10)      
10 정 용 GEO Localization  
10 정희준 PathTalk  
24 김지훈 microBLAST  
24 이혜원 Developing a data model for integrative analysis of DNA microarray, Tissue microarray and arrayCGH for cancer genomics research  
2005. November(11)      
7 김민구 바이오캔디를 이용한 독성유전체 자료분석  
7 김지훈 BioLattice 투고 원고정리 결과 및 자체평가  
7 이혜원 Success factors for TMA-OM publication & defense  
14 한미령 Protein-Ontology Lattice  
14 나영지 바이오캔디를 이용한 방사선데이터 자료분석  
21 박유랑 Meta-data registry & a system for clinical trial  
21 우정훈 Considering genetic causality in Microarray Analysis  
21 정태수 Mycoplasma detection and subtyping  
28 정 용 Is this the final blow in the GEO wars?  
28 정희준-정태수 PathTalk, where to go with our pathway databases?  
28 나영지 Radiation data analysis using BIOCANDi  
28 임수아 Research plan  
2005. December(12)      
5 이혜원 Xperanto-Tox: integrating Xperanto with TMA-OM  
5 김민구 바이오캔디를 이용한 독성유전체 자료분석  
5 김지훈 Comparative Genomics for Orientia  
12 조성범 Research Plan  
12 정희준 ArrayXPath-III and ArrayXPath-Homolog: 이종매핑..  
12 박유랑 GOChase-II  
12 한미령 Protein-Ontology Lattice  
19 이혜원 Creating a discussion group for TMA-OM users  
19 정 용 약물유전체 지식베이스  
19 우정훈 바이오캔디 모듈 정리 및 MSC 데이터 분석 진행상황  
26 김지훈 Rule mining from BioLattice  
26 나영지 Research plan  
26 김미현 학위논문 정리  
         
       
2004. January (1)    
6 [Xperanto] Integration and Exchange
13 [Grip] GRIP Interface 구성과 Ensembl localize
20 [ClinInfo] Clinical Guideline
27 [DataSharing] Microarray data 분석현황 (Lung cancer, Thyroid)
김민구 KGML -> BioSVG
         
2004. February (2)    
3 [Xperanto] Xperanto Progress on Jan. 2004
안성준 Lung Cancer Microarray Data 분석 목록
10 [Grip] From Gene to Pharmacogenetics
17 [ClinInfo] Implementation plan for TrialDB
24 [DataSharing] Pattern-specific genes in gastric cancer data set
Thyroid microarray data Preprocessing
         
2004. March (3)    
2 [Xperanto] Koogle prototype: Key resolving with chaining diverse identifiers
9 [Grip] Constructing PharmGKB with GRIP
16 [ClinInfo] Presenting of document constraints for structured discharge note
23 [DataAnalysis] Estimating hidden structure in biochemical pathways through microarray data set
30 [Xperanto] Cross-match of biological id and modification of ArrayXPath
         
2004. April (4)    
6 [Grip] Data Integrating Issue
13 [ClinInfo] A study of effective UMLS indexing in radiology reports
20 [DataAnalysis] Handling Incomplete Microarray Data
27 [Xperanto] SNUBI Microarray Database for MAGE-ML
         
2004. May (5)    
4 [Grip] Koogle, the finale
11 [ClinInfo] Privacy to the electronic medical record and telemedicine
18 [DataAnalysis] Molecular profiling of clinical features in breast cancer using principal components analysis
25 [Xperanto] Evaluation methods for pathway prediction model
         
2004. June(6)      
1 [Grip]
Gene family and protein family
 
8 [ClinInfo]
Integrating MAGE-OM and CDA using CDE (first step: generating HL7 Template)
 
15 [DataAnalysis]
Information Extraction from Multi-source data types
  
22 [Xperanto]
Extracting the absolute coordinate from various microarray data sets
  
29 [Grip]
Database of Association between disease and pathway
  
         
2004. July(7)      
6 [ClinInfo] Mapping between the Disease Names of OMIM and MeSH  
13 [DataAnalysis] Prediction model for pathway extension using high throughput biological data  
20 [Xperanto] Integration of MAGE-OM and CDA using CDE (create template & CDA xml document)  
         
2004. August(8)      
10 [Grip] Summary of Gene Structure  
17 [ClinInfo] Clinical decision making at the point-of-care  
24 [DataAnalysis] PathPlus: extending a pathway using expression profiles based on the known knowledge about the pathway  
31 [Xperanto] Can we exchange SOFT formatted GEO into MIAME ?  
         
2004. September(9)      
7 [Grip] Formal Concept Analysis and Application  
13 [ClinInfo] 임상시험 수행 및 자료 관리시스템 개발  
20 [MAInfo] Affy setup in Xperant/BioCandi  
         
2004. October(10)      
04 [AppGen]
이혜원		 Object Model for Tissue Microarray Data  
04 [AppGen]
김민구		 High-order relation between gene regulatory module can be inferred from subspace clustering across large-scale gene expression data of yeast  
11 [SysBiol]
정희준		 PathMesh: database of pathway and drug related disease  
18 [ClinInfo]
박유랑		 Integration of MAGE-OM and CDA  
25 [MAInfo]
정태수		  Prediction performance of pathway and its network characters  
         
2004. November(11)      
01 [AppGen]
김민구		 Results and biological interpretation of k-gOPSM  
08 [SysBiol]
김지훈		 Formal concept analysis for GO-based cluster annotation  
15 [ClinInfo]
서화정		 Introduction of CDA related applications and works in progress  
22 [MAInfo]
김미현		 Independent Component Analysis of Microarray data  
29 [AppGen]
박찬희 		GRIP Ver 2 Modelling  
         
2004. December(12)      
6 [SysBiol]
김민구		 Current status of OPSM(sequential pattern mining)  
13 [ClinInfo]
홍승권		 Factors affecting the Diffusion of Electronic Medical Record in Hospital from a Physicians’ Perspective  
20 [MAInfo]
한미령		 Antidepressant를 투여한 cDNA mouse data 분석  

 

 

    
2003.January (1)  
7김지훈(쥰) Annotation work summary
14박지연 Microarray Data Portal
21서화정 CDA Implementation : How to create clinical document
28윤혜성 Classifier for XML document analysis I
     
2003.February (2)  
4이정애 A study of the comparison between X-ray simulator images and portal images
using landmarks in radiation therapy
11김지훈(H) Design and Analysis ofMicroarray Data with Replication
18김지훈(쥰) Genome browser implementation
25박찬희 Development of SNU-GRIP(Genome Research Informatics Potal)
     
2003.March (3)  
4박지연 MIAME-Compliant Data in MAGE-ML and MGED Ontology
11서화정 Modeling of CDA-based medical record form
18윤혜성 An Overview of Data Models for the Analysis of Biochemical Pathways
25이정애 Clustering Using MITree-K Algorithm
     
2003.April (4)  
1김지훈(H) BIOCANDI: a web-based gene expression data analysis tool
8김지훈(쥰) Genome-wide expression analysis
15박찬희 Database Integration (Case 1 . LocusLink AND UniGene)
22박지연 Implementing MAGE-OM in ontology and relational schema
29서화정 Designing database for clinical studies
     
2003.May (5)  
6윤혜성 Experimantal Results of WebKB and BIND XML data
13이정애 Unified Medical Language System (UMLS)
20박지연 Database Design and Implementation of MGED Standards
27김지훈(H) Visualizing Genomic Data Microarrays
29정태수 Social Network Anlysis of DNA Microarray Data
     
2003.June(6)  
3김지훈(쥰) The consistency related problems to handle microarray data
10박찬희 SNUBI server 시스템 변경 및 전체 GenBank 중 Human/Rat/Mouse 조사
12이권무 Systems Biology - Overview
17서화정 Designing of CDA-based CDMS
24박지연 Object-oriented Analysis of Xperanto System
     
2003.July (7)  
1서화정 Designing of Web-based Clinical Data Management System
-Modeling of Data Structure for Structured Clinical Document Sharing-
8윤혜성 A Step to create Automatic View Detection Algorithm Design : A Survey
15이정애 What’s in UMLSKS(UMLS Knowledge Source Server)?
22김지훈(H) How to deal with a bulk of microarray Data
     
2003.August (8)  
1김지훈(쥰) Questions about microarray data analysis
5[Data Sharing] Taking the first step in learning from the biomedical data
12[Xperanto] Introduction to Xperanto and PharmGKB
19[Grip] MGD (the Mouse Genome Database ) 분석
26[ClinInfo] Introduction to Clinical Informatics  강남센터, 분당병원 charting 구조 분석
     
2003.September (9)  
2[Data Sharing] How to turn raw data into valuable papers
16[Xperanto] Xperanto Progress in August  Xperanto Release Plan
23[Grip] The goal of GRIP
30[ClinInfo] Works in progress, Clinical Informatics
     
2003.October (10)  
7[Data Sharing] Data Sharing Team Monthly Meeting
14[Xperanto] Xperanto Progress,  BioSVG: Current and Future
21[Grip] SwissProt/TrEMBL in GRIP
28[ClinInfo] Critical Pathways
     
2003.November (11)  
4[Data Sharing] Analysis of lung cancer data,  Construction of parsimonious two-mode network in yeast
11[Xperanto] Xperano progress (11)
18[Grip] GRIP Monthly Reports (11)
25[ClinInfo] Designing of Web-based Clinical Data Management System
     
2003.December (12)  
2[Data Sharing] Approaches for data analysis
9[Xperanto] Xperanto Progress on December
16[Grip] GRIP Monthly Report (12월)
23[ClinInfo] Web-based Clinical Data Management System
Mapping Free Text into UMLS Concepts - Progress
30[DataSharing] Microarray Data Preprocessing
정태수, 윤혜성, 박지연, 김지훈(Hoonie), 이혜원, 한미령

 

 

2002.March (3)  
14김지훈(쥰) Introduction to Affymetrix Chip Algorithm
21김지훈(H) Chip Data Normalization
28박찬희 Identification of Genes in Human Genomic DNA
     
2002.April (4)  
4박지연 Microarray Data Standardization and XML
11서화정 Medical Vocabulary and Classification Systems
18윤혜성 Classification Tree and CART, review
25온정헌 Biology of Orientia tsutsugamushi
     
2002.May (5)  
2김지훈(H) Hands-on courseware of clustering microarray data
7김지훈(쥰)Automation of Annotation
14박찬희 Introduction to Parallel Computing, Parallel implementation for clustering DNA chip data
21박지연 MAGE-ML and XML programming in JAVA
28서화정 Mis-recognized medical correction algorithm for speech-based electonic medical record
     
2002.June (6)  
4윤혜성 Semi-supervised learning
11온정헌 Gibbs Sampler in Local Multiple Alignment
18김지훈(H) Extrapolating microarray data
25김지훈(쥰) Chronobiological analysis for the reliable identification of cell-cycle regulated genes
from gene expression profiles
     
2002.July (7)  
2박찬희 Adaptive quality-based clustering of gene expression profile
9박지연 MAGE-ML programming using Java API
     
2002.August (8)  
20서화정 The Introduction of web-based XML-Clinical Data Communication
27윤혜성 From SSD to SSL
27김지훈(쥰) Chronobiological analysis for the reliable identification of cell-cycle regulated genes from gene expression profiles
27김지훈(H) Array CGH Data Analysis
27박지연 Establishment of microarray database
27박찬희 Current Research GRIP Project
27온정헌 Transcriptional regulatory network
     
2002.September (9)  
3온정헌 Revealing modular organization in the yeast transcriptional network
10김지훈(H) Data modelling, Database design
17김지훈(쥰) Identification of regulatory elements
24박찬희 Summary my work & Biological database integration strategy
     
2002.October (10)  
1박지연 Microarray Database Implementation: an approach using Relational and Ontological models
8윤혜성 Semisupervised Learning for Semistructured Biodata Analysis
22온정헌 Gene to Gene Relationship - A Set Approach -
29서화정 XML-Clinical Data Communication based on Web
29김지훈(쥰) Genome annotation strategy
     
2002.November (11)  
5김지훈(H) Pipielining microarray data analysis
12김지훈(쥰) Genome annotation framework [pdf]
19박찬희 MITree 알고리즘의 구현 (Part 1)
21이정애 An Overview of the Clinical Document Architecture
26박지연 RDB data export to MAGE-ML
     
2002.September (12)  
3서화정 Clinical Document Communication based on HL7 version 3
10윤혜성 Graph-Based Clustering Algorithms in Bioinformatics
17온정헌 On the Society of Yeast Genes
24김지훈(H) Recognizing biomedically meaningful regions using HMM