JOURNAL CLUB

journal club은 매주 토요일 9시에 있습니다

2006

2005

2004

2003

2002

Order: 정태수, 김지훈, 조성범, 정희준, 박찬희, 온정헌, 김민구, 이혜원, 박유랑, 나영지, 우정훈, 정용 (총 12명)

2006	May(05)
6	온정헌	Ab initio genotype–phenotype association reveals intrinsic modularity in genetic networks
6	우정훈	Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function.
13	나영지	Oncogenic pathway signatures in human cancers as a guide to targeted therapies
13	정용	Data integration and genomic medicine
20	정태수
20	김지훈	A System Based Approach to Interpret Dose and Time-dependent Microarray Data: Quantitative Integration of GO Ontology Analysis for Risk Assessment
27	조성범
27	정희준

2006	April(04)
1	우정훈	Genetic regulators of large-scale transcriptional signatures in cancer.
1	박유랑	An XML-based System for Synthesis of Data from Disparate Databases
8	정용	DrugBank: a comprehensive resource for in silico drug discovery and exploration
8	김지훈	Integrated analysis of gene expression by Association Rules Discovery
15	조성범	Genome-wide association study in esophageal cancer using GeneChip mapping 10k array
15	정희준	CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks
22	박찬희	Different methods of calculating gene expression from short oligonucleotide array data will give different results
22	온정헌	Uncovering the overlapping community structure of complex networks in nature and society
29	김민구	Contributions of low molecule number and chromosomal positioning to stochastic gene expression
29	박유랑	RxNorm: Prescription for electronic drug information exchange

2006	March(03)
4	김지훈	Instance-based concept learning from multiclass DNA microarray data
4	조성범	Epistasis analysis with global transcriptional phenotypes
11	성정환	The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution
11	김민구	Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer
18	정태수	A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae
18	온정헌	Proteome survey reveals modularity of the yeast cell machinery
25	정희준	WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data
25	나영지	Functional annotation and network reconstruction through cross-platform integration of microarray data

2006	February(02)
4	나영지	Finding biological process modifications in cancer tissues by mining gene expression correlations
4	김민구	Shifting and scaling patterns from gene expression data
11	이혜원	Chemical Effects in Biological Systems (CEBS) object model for toxicology data, SysTox-OM: design and application.
11	박유랑	A statistical approach to scanning the biomedical literature for pharmacogenetics knowledge.
18	정희준	miRBase: microRNA sequences, targets and gene nomenclature
18	우정훈	Multi-way clustering of microarray data using probabilistic sparse matrix factorization
25	정용	Creation and implications of a phenome-genome network
25	정태수	Standardizing global gene expression analysis between laboratories and acroos platforms

2006	January(01)
07	나영지	Comparison of normalization methods for CodeLink Bioarray data
07	윤혜성	A protocol for building and evaluting predictors of disease state based on microarray data
14	온정헌	A haplotype map of the human genome
14	정태수	Gene selection using support vector machines with non-convex penalty
21	김지훈	Biological profiling of gene groups utilizing gene ontology
21	조성범	Signal transduction profiling of individual tumor samples

2005	December(12)
3	박유랑	ONTOFUSION: Ontology-based integration of genomic and clinical databases
3	정태수	PLAID MODELS FOR GENE EXPRESSION DATA
10	김지훈	L2L: a simple tool for discovering the hidden significance in microarray expression data
17	정희준	Linking pathway gene expressions to the growth inhibition response from the National Cancer Institute's anticancer screen and drug mechanism of action
17	조성범	A model-vased scan statistics for identifying extreme chrmosomal regions of gene expression in human tumors
24	우정훈	Dual activation of pathways regulated by steroid receptors and peptide growth factors in primary prostate cancer revealed by Factor Analysis of microarray data
24	김민구	Differential coexpression analysis using microarray data and its application to human cancer
31	이혜원	Chemical Effects in Biological Systems-Data Dictionary (CEBS-DD): A Compendium of Terms for the Capture and Integration of Biological Study Design Description, Conventional Phenotypes, and Omics Data
31	박유랑	Overview of BioCreAtIvE: critical assessment of information extraction for biology

2005	November(11)
5	우정훈	Statistical methods for ranking differentially expressed genes.
5	온정헌	An expression index for Affymetrix GeneChips based on the generalized logarithm
12	김민구	Assessing the limits of genomic data integration for predicting protein networks
12	김미현	Improving molecular cancer class discovery through sparse non-negative matrix factorization
26	나영지	Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed genes in lung cancer tissues
26	이혜원	A new algorithm for comparing and visulaizing relationships beween hierarchical and flat gene expression data clusterings

		ECCB2005 Review
10.31	우정훈	Data-adaptive test statistics for microarray data
10.31	이혜원	Fusing microarray experiments with multivariate regression.
10.31	정희준	Identifying active transcription factors and kinases from expression data using pathway queries
10.31	김민구	Analyzing microarray data using quantitative association rules
10.31	조성범	Recovering haplotype structure through recombination and gene conversion

2005	October(10)
1	김미현	Mining Ratio Rules Via Principal Sparse Non-Negative Matrix Factorization
1	나영지	Study of coordinative gene expression at the biological process level
8	우정훈	A Theoretical Analysis of Gene Selection
8	온정헌	Validation and refinement of gene-regulatory pathways on a network of physical interactions
15	이혜원	An analysis of extensible modelling for functional genomics data
15	김지훈	PAGE: Parametric Analysis of Gene Set Enrichment
22	박찬희	Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
22	윤혜성	Mining coherent dense subgraphs across massive biological networks for functional discovery
29	조성범	Mining for regulatory programs in the cancer transcriptome
29	정희준	A network-based analysis of systemic inflammation in humans

2005	September(9)
3	박유랑	Ontological analysis of gene expression data current tools, limitations, and open problems
3	정희준	Generalized biological database platform based on cross-referenced tables(XRT)
10	조성범	Intergrative analysis of cancer transcriptome
10	김민구	Local modeling of global interactome networks
24	정태수	Biomarker discovery in microarray gene expression data with Gaussian processes
24	윤혜성	Ensemble dependence model for classification and prediction of cancer and normal gene expression data
24	성정환	Computational biology & microarrays on microRNA research

2005	August(8)
6	박유랑	Healthcare IT Collaboration in Massachusetts: The Experience of Creating Regional Connectivity
6	이혜원	Visualizing information across multidimensional post-genomic structured and textual databases
13	나영지	Use of extreme patient samples for outcome prediction from gene expression data
13	우정훈	Prediction of Nephrotoxicant Action and Identification of Candidate Toxicity-Related Biomarkers
20	김미현	Metagenes and molecular pattern discovery using matrix factorization
20	정태수	Alignment of metabolic pathways
27	김지훈	Using process diagrams for the graphical representation of biological networks
27	박찬희	PhD: a web database application for phenotype data management

2005	July(7)
2	정태수	Supervised enzyme network inference from the integration of genomic data and chemical information
2	김민구	A procedure for assessing GO annotation consistency
9	박찬희	LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts.
9	한미령	The Interactive Online SKY/M-FISH & CGH Database and the Entrez Cancer Chromosomes Search Database: Linkage of Chromosomal Aberrations with the Genome Sequence
16	정희준	GoPubMed: exploring PubMed with the Gene Ontology
16	조성범	An oncogenic KRAS2 expression signature identified by cross-species gene-expression anlaysis
23	김지훈	Comparison of computational methods for the identification of cell cycle-regulated genes
23	온정헌	Peeling the yeast protein network.
30	한미령	Visualization-based discovery and analysis of genomic aberrations in microarray data
30	김옥구	Automated Detection of Adverse Events Using Natural Language Processing of Discharge Summaries

2005	June(6)
4	조성범	Pattern Robustness of Diagnostic Gene expression Signatures in Leukemia
4	김민구	Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments.
11	박유랑	Standardization initiatives in the (eco)toxicogenomics domain: a review
11	김옥구	Validation of a Discharge Summary Term Search Method to Detect Adverse Events
18	윤혜성	Architectur of basic building blocks in protein and domain structural interaction networks
18	김미현	Application of Revised Version of Neural Independent Component Analysis to Classification Problems of Confiscated Methaphetamine
25	이혜원	Integration of text- and data-mining using ontologies successfully selects disease gene candidates
25	나영지	Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information

2005	May(5)
7	김미현	Diagnostic plots for detecting outlying slides in a cDNA microarray experiment
7	나영지	Modularized learning of genetic interaction networks from biological annotations and mRNA expression data
14	정태수	NETWORK BIOLOGY: UNDERSTANDING THE CELL’S FUNCTIONAL ORGANIZATION
14	김지훈	Inferring combinatorial regulation of transcription in silico
21	박찬희	RNA expression microarrays (REMs), a high-throughput method to measure differences in gene expression in diverse biological samples
21	윤혜성	HykGene: a hybrid approach for selecting marker genes for phenotype classification using microarray gene expression data
28	정희준	GeneWays: a system for extracting, analyzing, visualizing,and integrating molecular pathway data
28	이수연	Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
2005	April(4)
2	박찬희	GECKO: a complete large-scale gene expression analysis platform
2	윤혜성	Clustering of diverse genomic data using information fusion
9	정희준	GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments
9	이수연	Testing association of a pathway with survival using gene expression data
16	조성범	Normalization of two-channel microarray experiments: a semiparametric approach
16	김민구	Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae
23	이혜원	Use of laser capture microdissection, cDNA microarrays, and tissue microarrays in advancing our understanding of prostate cancer
23	김옥구	Weighted analysis of microarray gene expression using maximum-likelihood
30	한미령	Use of Targeted Array-Based CGH for the Clinical Diagnosis of Chromosomal Imbalance: Is Less More?
30	박유랑	Genomic Messaging System and DNA Mark-Up Language for Information-Based Personalized Medicine with Clinical and Proteome Research Applications

2005	March(3)
7	박유랑	Generating XML schemas for DICOM structured reporting templates.
7	김미현	Can gene expression profiling predict survival for patients with squamous cell carcinoma of the lung?
14	나영지	A statistical method for identifying differential gene–gene co-expression patterns
14	정태수	Inferring quantitative models of regulatory networks from expression data
26	정태수	Quick & simple: quality control of microarray data.
26	김지훈	CLOE Identification of putative functional relationships among genes by comparison of expression profiles between two species

2005	February(2)
14	이수연	A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
14	이혜원	Hierarchical clustering analysis of tissue microarray immunostaining data identifies prognostically significant groups of breast carcinoma.
21	김민구	Modular organization of cellular networks
21	조성범	Molecular decomposition of complex clinical phenotypes using biological structured analysis of microarray data
28	한미령	A method for calling gains and losses in array CGH data
28	김옥구	A High Productivity/Low Maintenance Approach to High-performance Computation for Biomedicine: Four Case Studies

2005	January(1)
03	박유랑	Achieving Evolvable Web-Database Bioscience Applications Using the EAV/CR Framework: Recent Advances
03	김미현	Metabolite fingerprinting : detecting biological features by independent component analysis
10	김지훈	A function-based framework for understanding biological systems
10	서화정	The Development of MML (Medical Markup Language) Version 3.0 as a Medical Document Exchange Format for HL7 Messages
24	정태수	Hidden Markov Models Approach to the Analysis of Array CGH Data
24	박찬희	Relational patterns of gene expression via nonmetric multidimensional scaling Analysis
31	윤혜성	A graph-theoretic approach to test disparate datatypes
31	정희준	Structuration of Phenotypes / Genotypes through Galois Lattices and Implications

		PSB2005 Review
17	정태수	GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data
17	정태수	Sparse Factorizations of Gene Expression Guided by Binding Data
17	정희준	Ontology Driven Dynamic Linking of Biology Resources
17	정희준	Parameterization of A Nonlinear Genotype to Phenotype Map Using Molecular networks
17	한미령	GOTREES: Predicting GO associations from protein domain composition using decision trees
17	한미령	Multi-Aspect gene relation analysis
17	나영지	Explatory Visual Analysis Of Pharmacogenomic Results

2004	December(12)
4	박찬희	Accurate detection of aneuploidies in array CGH and gene expression microarray data
4	서화정	Clinical Document Architecture Enables Electronic Medical Records to Wireless Mobile Computing
11	윤혜성	Protecting DNA Sequence Anonymity with Generalization Lattices
11	정태수	Systematic benchmarking of microarray data classification: assessing the role of non-linearity and dimensionality reduction
18	정희준	Generalized Venn diagrams: A new method of visualizing complex genetic set relations
18	김민구	Mining Gene Expression Data for Positive and Negative Co-regulated Gene Clusters
27	이혜원	The ArrayExpress Gene Expression Database: a Software Engineering and implementation Perspective
27	한미령	Detection of low level genomic alterations by comparative genomic hybridization based on cDNA micro-arrays
2004	November(11)
6	정태수	Analysis of array CGH data: from signal ratio to gain and loss of DNA regions
6	박유랑	Exploring the Portability of Informatics Capabilities from a Clinical Application to a Bioscience Application
13	정희준	Local correlation of expression profiles with gene annotation - proof of concept for a general conciliatory method
13	이혜원	A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
13	한미령	Genome-wide array comparative genomic hybridization analysis reveals distinct amplifications in osteosarcoma
20	김지훈	Transcriptional regulatory code of a eukaryotic genome
20	김미현	Independent component analysis of microarray data in the study of endometrial cancer
27	이석호	Identifying differentially expressed genes from microarray experiments via statistic synthesis
27	박유랑	QIS: A framework for biomedical database federation.

2004	October(10)
02	윤혜성	Mining Scale-free Networks using Geodesic Clustering
02	김미현	Statistical significance for hierarchical in genetic association and microarray expression studies
09	이석호	arrayMagic : two-colour cDNA microarray quality control and preporcessing
09	한미령	Gene expression patterns as marker for 5-year postoperative prognosis of primary breast cancers
16	김민구	Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem
16	김지훈	Using the gene ontology for microarray data mining
23	서화정	A standard XML Schema for computerised anaesthetic records
25	박찬희	GEPIS--quantitative gene expression profiling in normal and cancer tissues
30	이혜원	CEBS object model for systems biology data, SysBio-OM

2004	September(9)
4	정희준	TRANSFAC, TRANSPATH and CYTOMER as starting points for an ontology of regulatory networks
4	이혜원	The tissue microarray data exchange specification: implementation by the Cooperative Prostate Cancer Tissue Resource.
11	김민구	Biclustering Algorithms for Biological Data Analysis: A Survey
11	정태수	Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph
18	정희준	Biological data and conceptual modelling methods

2004	August(8)
7	김지훈	Predicting Gene Expression from Sequence
7	이석호	PCA disjoint models for multiclass cancer analysis using gene expression data
14	김미현	affy-analysis of Affymetrix GeneChip data at the probe level
14	서화정	XML-based application interface services - a method to enhance integrability of disease specific systems
21	김민구	Finding disease specific alterations in the co-expression of genes
21	김기원	The male specific region of human Y chromosome is a mosaic of discrete sequence classes
28	박유랑	An object model and database for functional genomics.
28	한미령	Prediction of prognosis of estrogen receptor-positive breast cancer with combination of selected estrogen-regulated genes.

		ISMB2004 Review
31	정태수	Inferring quantitative models of regulatory networks from expression data
31	김민구	TraitMap: An XML-based Genetic-map Database combining multi-genic loci & biomolecular networks
31	박유랑	Mining MEDLINE for implicit links between dietary substances and diseases
31	김기원	Filling gaps in a metabolic network using expression information
31	박찬희	Into the heart of darkness: large scale clustering of human non-coding DNA
31	김미현	Statistical modeling of sequencing errors in SAGE libraries
31	한미령	Partial cox regression analysis for high-dimensional microarray gene expression data
31	정희준	Reactome review
31	이혜원	Predicting genetic regulatory response using classification

2004	July(7)
3	김지훈(쥰)	Methods for automated concept mapping between medical databases
10	박찬희	The aMAZE LightBench: a web interface to a relational database of cellular processes
10	윤혜성	How (not) to protect genomic data privacy in a distributed network: using trail re-identification to evaluate and design anonymity protection systems.
24	정태수	TopNet: a tool for comapring biological subnetworks, correlating protein properties with topological statistics
24	박찬희	The Genome Knowledgebase: A Resource for Biologists and Bioinformaticists

2004	June(6)
5	김지훈(H)	Microarray data clustering based on temporal variation: FCV with TSD preclustering
5	박유랑	ArrayTrack.Supporting Toxicogenomic Research at the U.S. Food and Drug Administration National Center for Toxicological Research
12	서화정	XML as standard for communicating in a document-based electronic patient record: a 3 years experiment.
12	김민구	Transcriptional regultory networks in Saccharomyces cerevisiae
19	한미령	Expression Profiling of Purified Normal Human Luminal and Myoepithelial Breast Cells: Identification of Novel Prognostic Markers for Breast Cancer
19	김기원	Conserved pathways within bacteria and yeast as revealed by global protein network alignment
26	이혜원	A cross-study comparison of gene expression studies for the molecular classification of lung cancer
26	정희준	TRMP: A Dataqbase of Therapeutically Relevant Multiple-Pathways

2004.	May (5)
1	한미령	Expression profiling to predict postoperative prognosis for estrogen receptor-negative breast cancers by analysis of 25,344 genes on a cDNA microarray
1	박유랑	Development of common data elements: the experience of and recommendations from the early detection research network
8	김기원	Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes
8	김지훈(H)	Gene selection and clustering for time-course and dose-response microarray experiments using order-restricted inference.
15	김지훈(쥰)	Quantifying the relationship between co-expression, co-regulation and gene function
15	박찬희	GoMiner: a resource for biological interpretation of genomic and proteomic data
22	정태수	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
22	윤혜성	An Architecture for Biological Information Extraction and Representation
29	이정애	PubMatrix: a tool for multiplex literature mining.

2004.	April (4)
3	박지연	Biological detection of low radiation doses by combining results of two microarray analysis methods
3	김지훈(쥰)	Inferring transcriptional regulation relationship from microarray time series data
10	서화정	UML-XML-RDB Model Mapping Solution for Facilitating Information Standardization and Sharing in Construction Industry
10	이정애	Selective automated indexing of findings and diagnoses in radiology reports
17	정태수	Discovering molecular pathways from protein interaction and gene expression data
17	김지훈(H)	Differential amplification of gene expression in lens cell lines conditioned to survive peroxide stress
24	이혜원	Common structural patterns in human genes.
24	김민구	Network-based approach for the comprehensive mapping between biological identifiers

2004.	March (3)
6	이혜원	Molecular profiling of mouse lung tumors: association with tumor progression, lung development, and human lung adenocarcinomas
6	김민구	Meta-databases providing collection of hyperlinks
13	한미령	Gene expression predictors of breast cancer outcomes
13	박유랑	Ontology Versioning as an Element of an Ontology-Management Framework
20	김기원	Chipping away at the chip bias: RNA degradation in microarray analysis
20	정희준	The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface
27	윤혜성	A new distributed data mining model based on similarity
27	박찬희	Pharmacogenetics: potential for individualized drug therapy through genetics

2004.	February (2)
7	김지훈(쥰)	Statistical resynchronization and Bayesian detection of periodically expressed genes
7	박찬희	Automatic extraction of mutations from Medline and cross-validation with OMIM
14	박지연	A Mapping Schema and Interface for XML Stores
14	서화정	Presenting XML-based medical discharge letters according to CDA
21	윤혜성	CloseGraph: Mining Closed Frequent Graph Patterns
21	이정애	Towards linking patients and clinical information: detecting UMLS concepts in e-mail
28	정태수	ESPD: a pattern detection model underlying gene expression profiles
28	정희준	Computational knowledge integration in biopharmaceutical research

2004.	January (1)
3	서화정	XPERANTO: Publishing Object-Relational Data as XML [Reference] Querying XML Views of Relational Data
3	정희준	GenePublisher: Automated analysis of DNA microarray data
10	이혜원	Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice
10	김민구	A protein interaction map of Drosophila melanogaster
17	한미령	Differentiation of lobular versus ductal breast carcinomas by expression microarray analysis
17	박유랑	caCORE: A common infrastructure for cancer informatics
31	김기원	Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data
31	김지훈(H)	EVALUATION AND COMPARISON OF CLUSTERING ALGORITHMS IN ANGLYZING ES CELL GENE EXPRESSION DATA


2003.	January (1)
9	김지훈(H)	Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
16	김지훈(쥰)	Microarray analysis of orthologous genes: conservation of the translational machinery across species at the sequence and expression level
23	박찬희	SNPper: retrieval and analysis of human SNPs

		PSB 2003 Review
8	박지연	Linking Molecular Imaging Terminology to the Gene Ontology (GO)
8	정희준	Multiclass Cancer Classification Using Gene Expression Profiling and Probabilistic Neural Networks
8	이혜원	PyPop: A Software Framework for Population Genomics: Analyzing Large-Scale Multi-Locus Genotype DataDIGIT: A Novel Gene Finding Program by Combining Gene-Finders
8	박찬희	Methods for Analysis and Visualization of SNP Genotype Data for Complex Diseases
8	서화정	Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS
8	이정애	Evaluation of the Vector Space Representation in Text-Based Gene Clustering
8	김지훈(H)	Trajectory Clustering: A Non-Parametric Method for Grouping Gene Expression Time Courses with Applications to Mammary Development
8	김지훈(쥰)	DIGIT: A Novel Gene Finding Program by Combining Gene-Finders

2003.	February (2)
6	박지연	MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
13	서화정	A user-centered model for web site design: needs assessment, user interface design, and rapid prototyping
20	윤혜성	Mining gene expression databases for association rules
27	이정애	Associating Genes with Gene Ontology Codes Using a Maximum Entropy Analysis of Biomedical Literature

2003.	March (3)
6	김지훈(H)	Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
13	김지훈(쥰)	A multivariate approach applied to microarray data for identification of genes with cell cycle-coupled transcription
20	박지연	Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO)
27	박찬희	A database on alternative splice forms on the Integrated Genetic Map Service (IGMS)

2003.	April (4)
3	윤혜성	Gene Functional classification by Semi-supervised Learning from Heterogeneous Data
10	이정애	A literature-based method for assessing the functional coherence of a gene group
14	서화정	Designing and implementing special-purpose databases: lessons from the pharmacogenetic network
24	김지훈(H)	Diagnosis of multiple cancer types by shrunken centroids of gene expression

2003.	May (5)
16	김지훈(쥰)	Analysis of cell-cycle-specific gene expression in human cells as determined by microarrays and double-thymidine block synchronization
22	서화정	Data extraction and ad hoc query of an entity-attribute-value database
26	박지연	The application of the unified modeling language in object-oriented analysis of healthcare information systems

2003.	June (6)
5	이정애	The Role of Domain Knowledge in Automating Medical Text Report Classification
19	김지훈(H)	Genetics of gene expression surveyed in maize, mouse and man
26	김지훈(쥰)	Identifying Periodically Expressed Transcripts in Microarray Time Series Data

2003.	July (7)
3	박지연	An approach to object-relational mapping in bioscience domains
10	박찬희	Gene interaction in DNA microarray data is decomposed by information geometric measure
24	윤혜성	Active Learning with Strong and Weak Views: A Case Study on Wrapper Induction
31	서화정	Using the XML-Based Clinical Document Architecture for Exchange of Structured Discharge Summaries

2003.	August (8)
9	이정애	The creation of an ontology of clinical document names
9	정태수	Subnetwork hierarchies of biochemical pathways
16	김지훈(H)	Clustering of housekeeping genes provides a unified model of gene order in the human genome
16	정희준	Global functional profiling of gene expression
23	김민구	Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer

2003.	September (9)
6	박유랑	ChipInfo: Software for extracting gene annotation and gene ontology information for microarray analysis
6	박지연	The Design and Performance Evaluation of Alternative XML Storage Strategies
8	김지훈(쥰)	Expression deconvolution: A reinterpretation of DNA microarray data reveals dynamic changes in cell populations
8	이혜원	Molecular Profiling of Non-Small Cell Lung Cancer and Correlation with Disease-free Survival
8	서화정	Using the eXtensible Markup Language (XML) in a regional electronic patient record for patients with malignant diseases
20	정태수	The topology of the transcription regulatory network in the yeast, Saccharomyces cerevisiae
20	이정애	A Pilot Study of Contextual UMLS(R) Indexing to Improve the Precision of Concept-Based Representation in XML-Structured Clinical Radiology Reports
27	윤혜성	Improving Information Extraction through Biological Correlation
27	이혜원	Association of genes to genetically inherited diseases using data mining

2003.	October (10)
4	정희준	Pathways database system: an integrated system for biological pathways
4	김민구	Comparing protein abundance and mRNA expression levels on a genomic scale
11	한미령	Gene expression profiles of human breast cancer progression
11	박유랑	Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies
18	김지훈(H)	Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity
18	김지훈(쥰)	Phase-independent rhythmic analysis of genome-wide expression patterns
25	박찬희	Personalized and Automated dbSNP Surveillance System
25	박지연	A Generic Load/Extract Utility for Data Transfer between XML Documents and Relational Databases

2003.	November (11)
8	정태수	Using Bayesian Networks to Analyze Expression Data
8	윤혜성	Artificial gene networks for objective comparison of analysis algorithms
15	이정애	Information extraction from full text scientific articles: where are the keywords?
15	서화정	Discharge and referral data exchange using global standards--the SCIPHOX project in Germany
22	정희준	PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis
22	이혜원	A training-testing approach to the molecular classification of resected non-small cell lung cancer
29	김민구	Genome-wide pathway analysis and visualization using gene expression data
29	한미령	Molecular classification of familial non-BRCA1/BRCA2 breast cancer

2003.	December (12)
6	박유랑	GOChase: Correcting Errors from Gene Ontology-based Annotations for Gene Products
6	김지훈(H)	Statistical tests for identifying differentially expressed genes in time-course microarray experiments
13	김지훈(쥰)	Computational discovery of gene modules and regulatory networks
13	박찬희	Development of Human Protein Reference Database as an Initial Platform for Approaching Systems Biology in Humans
20	박지연	A New Inlining Algorithm for Mapping XML DTDs to Relational Schemas
20	정태수	Scoring clustering solutions by their biological relevance
27	윤혜성	Deriving phylogenetic trees from the similarity analysis of metabolic pathways
27	이정애	A Study of Biomedical Concept Identification: MetaMap vs. People

2002.	April (4)
2	온정헌	Gene expression analysis with universal n-mer arrays
9	김지훈(H)	Significance analysis of microarrays applied to the ionizing radition response
16	김지훈(쥰)	Re-annotation of genome microbial coding-sequence: finding new genes and inaccurately annotated genes
23	박찬희	Prediction of probable genes by Fourier analysis of genomic sequences

2002.	May (5)
2	박지연	Argus--a new database system for Web-based analysis of multiple microarray data sets
9	윤혜성	XML documentation of biopathways and their simulations in Genomic Object Net
16	서화정	Standard method for describing an electronic patient record template: application of XML to share domain knowledge
23	온정헌	Systematic determination of genetic network architecture
30	김지훈(H)	Missing value estimation methods for DNA microarrays

2002.	June (6)
20	김지훈(쥰)	Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm
25	박찬희	A cluster validity framework for genome expression data

2002.	July (7)
4	박지연	Automating data acquisition into ontologies from pharmacogenetics relational data sources using declarative object definitions and XML
11	윤혜성	Active + Semi-Supervised Learning = Robust Multi-View Learning

2002.	August (8)
22	온정헌	Discrimination between paralogs using microarray analysis: Application to the Yap1p and Yap2p transcriptional networks
29	서화정	An update on HL7's XML-based document representation standards

2002.	September (9)
5	김지훈(H)	Large-scale prediction of Saccharomyces cerevisize gene function using overlapping transcriptional clusters
12	김지훈(쥰)	A motif-based profile scanning approach for genome-wide prediction of signaling pathways
16	김지훈(쥰)	Identification of regulatory elements using a feature selection method
26	박지연	The Binding Database: data management and interface design

2002.	October (10)
10	박찬희	A bioinformatic strategy to rapidly characterize cDNA libraries
17	서화정	Plug-and-play XML: a health care perspective
24	윤혜성	Handling Very Large Numbers of Association Rules in the Analysis of Microarray Data
31	김지훈(H)	Variance stabilization applied to microarray data calibration and to the quantification of differential expression

2002.	November (11)
7	온정헌	Binary analysis and optimization-based normalization of gene expression data
14	박지연	Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis
21	김지훈(쥰)	The meaning of it all: web-based resources for large-scale functional annotation and visualization of DNA microarray data

2002.	December (12)
5	이정애	XML for electronic clinical communications in Scotland
12	서화정	Integrating medical information and knowledge in the HL7 RIM
26	윤혜성	Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees